Package: maldipickr
Title: Dereplicate and Cherry-Pick Mass Spectrometry Spectra
Version: 1.3.3
Authors@R: c(
    person("Charlie", "Pauvert", , "cpauvert@ukaachen.de", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-9832-2507")),
    person("David", "Wylensek", role = "ctb",
           comment = c(ORCID = "0000-0002-8424-5712")),
    person("Selina", "Nüchtern", role = "ctb"),
    person("Thomas", "Clavel", role = c("ctb", "fnd", "cph"),
           comment = c(ORCID = "0000-0002-7229-5595"))
  )
Description: Convenient wrapper functions for the analysis of
        matrix-assisted laser desorption/ionization-time-of-flight
        (MALDI-TOF) spectra data in order to select only representative
        spectra (also called cherry-pick). The package covers the
        preprocessing and dereplication steps (based on Strejcek,
        Smrhova, Junkova and Uhlik (2018)
        <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF
        spectra before the final cherry-picking step. It enables the
        easy exclusion of spectra and/or clusters to accommodate
        complex cherry-picking strategies. Alternatively,
        cherry-picking using taxonomic identification MALDI-TOF data is
        made easy with functions to import inconsistently formatted
        reports.
License: GPL (>= 3)
URL: https://github.com/ClavelLab/maldipickr,
        https://clavellab.github.io/maldipickr/
BugReports: https://github.com/ClavelLab/maldipickr/issues
Depends: R (>= 3.2.0)
Imports: dplyr, lifecycle, magrittr, MALDIquant, readBrukerFlexData,
        rlang, stats, tibble, tidyr, tidyselect, tools, utils
Suggests: coop, knitr, rmarkdown, spelling, testthat
VignetteBuilder: knitr
Config/fusen/version: 0.5.2
Encoding: UTF-8
Language: en-US
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Repository: https://clavellab.r-universe.dev
Date/Publication: 2026-06-23 11:04:34 UTC
RemoteUrl: https://github.com/clavellab/maldipickr
RemoteRef: HEAD
RemoteSha: 0560a8f8255e963e415ff57608ae2b2637268191
NeedsCompilation: no
Packaged: 2026-09-21 09:13:49 UTC; root
Author: Charlie Pauvert [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-9832-2507>),
  David Wylensek [ctb] (ORCID: <https://orcid.org/0000-0002-8424-5712>),
  Selina Nüchtern [ctb],
  Thomas Clavel [ctb, fnd, cph] (ORCID:
    <https://orcid.org/0000-0002-7229-5595>)
Maintainer: Charlie Pauvert <cpauvert@ukaachen.de>